IMAP-PART 09

Multi-Dimensional Data Visualization with integrated tools and Snakemake workflow

Fostering Reproducible Microbiome data visualization with Snakemake workflow

Microbiome Data Visualization

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Related work

Repo	Description	Status
IMAP-GLIMPSE	IMAP project overview	In-progress
IMAP-PART 01	Software requirement for microbiome data analysis with Snakemake workflows	In-progress
IMAP-PART 02	Downloading and exploring microbiome sample metadata from SRA Database	In-progress
IMAP-PART 03	Downloading and filtering microbiome sequencing data from SRA database	In-progress
IMAP-PART 04	Quality Control of Microbiome Next Generation Sequencing Reads	In-progress
IMAP-PART 05	Microbial profiling using MOTHUR and Snakemake workflows	In-progress
IMAP-PART 06	Microbial profiling using QIIME2 and Snakemake workflows	In-progress
IMAP-PART 07	Processing Output from 16S-Based microbiome bioinformatics pipelines	In-progress
IMAP-PART 08	Exploratory Analysis of 16S-Based Microbiome Processed Data	In-progress
IMAP-PART 09	Visualization of Microbiome Profiles with Snakemake workflows	In-progress
IMAP-SUMMARY	Summary of snakemake workflows for microbiome data analysis	In-progress

Citation

Please consider citing the iMAP article^[1] if you find any part of the IMAP practical user guides helpful in your microbiome data analysis.

References

[1]

Buza, T. M., Tonui, T., Stomeo, F., Tiambo, C., Katani, R., Schilling, M., … Kapur, V. (2019). iMAP: An integrated bioinformatics and visualization pipeline for microbiome data analysis. BMC Bioinformatics, 20. https://doi.org/10.1186/S12859-019-2965-4

Troubleshooting of FAQs

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Last updated on April 28, 2023.
Github_Repo: https://github.com/tmbuza/imap-data-visualization.
Repo compiled and maintained by: Teresia Mrema-Buza.